Overview
The CompOmics group, headed by Prof. Dr. Lennart Martens, is part of Ghent University's Department of Biomolecular Medicine and the VIB-UGent Center for Medical Biotechnology. The group specializes in the management, analysis and integration of high-throughput omics data with an aim towards establishing solid data stores, processing methods and tools to enable downstream systems biology research. The group develops web applications including Unipept, lesSDRF, MS²PIP, LNCipedia, and others.
In the news
- Proteomics just entered the foundation model era. OmicsFM is out. A modality-agnostic transformer pretrained on tens of thousands of proteomics profiles reprocessed from public PRIDE data, and it rivals transcriptomic models trained on orders of magnitude more data. It finds molecular relationships that co-expression misses, keeps biological structure across independent studies, and transfers across downstream tasks. Proteomics and transcriptomics turn out to capture complementary biology. Huge congratulations to Sander
- At #IMSC2026 in Lyon this week? Join Robbe Devreese and Ralf Gabriels for a #workshop on AI-readiness of proteomics data, a #talk on peptide property prediction, and #posters on ProteoBench, CCS prediction, and the HUPO-PSI AI-readiness working group.
- 𝐀 𝐟𝐫𝐞𝐬𝐡 𝐧𝐞𝐰 𝐥𝐨𝐨𝐤 𝐟𝐨𝐫 𝐂𝐨𝐦𝐩𝐎𝐦𝐢𝐜𝐬! 🎉 We've just launched an updated version of our website: https://compomics.com New look, same mission: open computational proteomics for everyone. Come explore: 🔬 Our work across the full proteomics workflow, from predicting peptide behaviour to making public data reusable at scale 🛠️ Our open-source software for proteomics data analysis 📄 What we've been busy publishing 📚 Step-by-step guides to get you using our tools 👥 Meet the people behind the code Take a look and
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